What I am Working On
Publications
†co-first author, *co-corresponding author
Preprints
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Quang-Huy Nguyen, Jiaqi Wang*, Wei-Shinn Ku*.
FedeKD: Energy-Based Gating for Robust Federated Knowledge Distillation under Heterogeneous Settings.
arXiv, 2605.05553 (Under Review).
2026
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Quang-Huy Nguyen, Zongliang Yue, Hao Chen, Wei-Shinn Ku*, Jiaqi Wang*.
Federated-inspired Single-cell Batch Integration in Latent Space.
arXiv, 2602.00423 (Under Review).
2026
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Quang-Huy Nguyen, Jiaqi Wang*, Wei-Shinn Ku*.
Conformalized Neural Networks for Federated Uncertainty Quantification under Dual Heterogeneity.
arXiv, 2602.23296 (Under Review).
2026
Featured in Martin Rodek's newsletter (Distinguished Data Engineer at Capital One)
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Hoang Le†, Van-Minh Nguyen†, Duc-Hai Tran, Van-Anh Tran, Van-Nui Nguyen, Quang-Huy Nguyen†*, Duc-Hau Le*.
DeepSSC: A Semi-Supervised Deep Learning Framework for Multi-Omics Cancer Subtype Classification and Biomarker Discovery.
bioRxiv, 2022.01.13.476268 (Under Review).
2026
*Work done at VinBigData and Bioinformatics Lab, HUST
Peer-reviewed Publications
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Trang T. H. Tran, ..., Quang-Huy Nguyen, ..., Duc-Hau Le*, Quan Nguyen*, Van H. Vu*, Nam S. Vo*.
VN1K: a genome graph-based and function-driven multi-omics and phenomics resource for the Vietnamese population.
bioRxiv, 2025.04.15.648991. Nature Communications (Acceptance in Principle).
2026
*Work done at VinBigData |
Featured in Giang Nguyen's
discussion
(VAST researcher) |
Covered in Vietnamese Genomic History and Identity video |
Covered in Project Completion Announcement video
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Ching-Lan Chang†, Michael A. Moshi†, Quang-Huy Nguyen†, ..., David Hess*, Edwin C. Oh*.
Wastewater intelligence predicts the emergence of clinically-relevant and drug-resistant Candidozyma auris at healthcare facilities.
Nature Communications.
2026
Featured in Bioengineer.org
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Quang-Huy Nguyen, Ha Nguyen, Edwin C. Oh, Tin Nguyen.
Current approaches and outstanding challenges of functional annotation of metabolites: a comprehensive review.
Briefings in Bioinformatics, 25(6):bbae498.
2024
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Quang-Huy Nguyen, Tin Nguyen, Duc-Hau Le.
DrGA: cancer driver gene analysis in a simpler manner.
BMC Bioinformatics, 23:86.
2022
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Quang-Huy Nguyen, Tin Nguyen, Duc-Hau Le.
Identification and validation of a novel three hub long noncoding RNAs with m6A modification signature in low-grade gliomas.
Frontiers in Molecular Biosciences, 9:801931.
2022
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Quang-Huy Nguyen, Duc-Hau Le.
oCEM: Automatic detection and analysis of overlapping co-expressed gene modules.
BMC Genomics, 23:39.
2022
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Thi Hai Yen Nguyen†, Tin Nguyen, Quang-Huy Nguyen†*, Duc-Hau Le*.
Re-identification of patient subgroups in Uveal Melanoma.
Frontiers in Oncology, 11:731548.
2021
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Quang-Huy Nguyen, Duc-Hau Le.
Similarity calculation, enrichment analysis, and ontology visualization of biomedical ontologies using UFO.
Current Protocols in Bioinformatics, 1(4):e115.
2021
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Quang-Huy Nguyen, Duc-Hau Le.
Improving existing analysis pipeline to identify and analyze cancer driver genes using multi-omics data.
Scientific Reports, 10:20521.
2020
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Quang-Huy Nguyen, Hung Nguyen, Tin Nguyen, Duc-Hau Le.
Multi-omics analysis detects novel prognostic subgroups of breast cancer.
Frontiers in Genetics, 11:574661.
2020
Peer-reviewed Conference
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Hung Nguyen, Bang Tran, Duc Tran, Quang-Huy Nguyen, Duc-Hau Le, Tin Nguyen.
Disease subtyping using community detection from consensus networks.
2020 12th International Conference on Knowledge and Systems Engineering (KSE), Can Tho, Vietnam, IEEE, 2020; 318-323.
2020